bamcleanheader.py(1)

remove illegal and malformed fields from a BAM file's header

Section 1 bamkit bookworm source

Description

BAMCLEANHEADER.PY

NAME

bamcleanheader.py - remove illegal and malformed fields from a BAM file’s header

SYNOPSIS

bamcleanheader.py [-h] [-S] [input [input ...]]

DESCRIPTION

remove illegal and malformed fields from a BAM file’s header

OPTIONS

positional arguments:

input

SAM/BAM file to inject header lines into. If ’-’ or absent then defaults to stdin.

optional arguments:

-h, --help

show this help message and exit

-S, --is_sam

input is SAM

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.