BIOM

NAME

biom - Biological Observation Matrix (BIOM) format (Python 3)

SYNOPSIS

biom [OPTIONS] COMMAND [ARGS]...

OPTIONS

--version

Show the version and exit.

-h, --help

Show this message and exit.

Commands:

add-metadata

Add metadata to a BIOM table.

convert

Convert to/from the BIOM table format.

export-metadata

Export metadata as TSV.

from-uc

Create a BIOM table from a vsearch/uclust/usearch BIOM...

head

Dump the first bit of a table.

normalize-table

Normalize a BIOM table.

show-install-info

Provide information about the biom-format installation.

subset-table

Subset a BIOM table.

summarize-table

Summarize sample or observation data in a BIOM table.

table-ids

Dump IDs in a table.

validate-table

Validate a BIOM-formatted file.

AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.