CNVKIT_ANTITARGET

NAME

cnvkit_antitarget - Derive off-target ("antitarget") bins from target regions.

DESCRIPTION

usage: cnvkit antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE]
[-o FILENAME]

targets

positional arguments:

targets

BED or interval file listing the targeted regions.

options:

-h, --help

show this help message and exit

-g FILENAME, --access FILENAME

Regions of accessible sequence on chromosomes (.bed), as output by genome2access.py.

-a AVG_SIZE, --avg-size AVG_SIZE

Average size of antitarget bins (results are approximate). [Default: 150000]

-m MIN_SIZE, --min-size MIN_SIZE

Minimum size of antitarget bins (smaller regions are dropped). [Default: 1/16 avg size, calculated]

-o FILENAME, --output FILENAME

Output file name.