CNVKIT_BINTEST

NAME

cnvkit_bintest - Test for single-bin copy number alterations.

DESCRIPTION

usage: cnvkit bintest [-h] [-s FILENAME] [-a ALPHA] [-t] [-o OUTPUT] cnarray

positional arguments:

cnarray

Bin-level log2 ratios (.cnr file), as produced by ’fix’.

options:

-h, --help

show this help message and exit

-s FILENAME, --segment FILENAME

Segmentation calls (.cns), the output of the ’segment’ command).

-a ALPHA, --alpha ALPHA

Significance threhold. [Default: 0.005]

-t, --target

Test target bins only; ignore off-target bins.

-o OUTPUT, --output OUTPUT

Output filename.