cnvkit-import-theta(1)
Convert THetA output to a BED-like, CNVkit-like tabular format.
Description
CNVKIT_IMPORT-THETA
NAME
cnvkit_import-theta - Convert THetA output to a BED-like, CNVkit-like tabular format.
Equivalently,
use the THetA results file to convert CNVkit .cns segments
to
integer copy number calls.
DESCRIPTION
usage: cnvkit import-theta [-h] [--ploidy PLOIDY] [-d DIRECTORY]
tumor_cns theta_results
positional arguments:
tumor_cns theta_results
options:
-h, --help
show this help message and exit
--ploidy PLOIDY
Ploidy of normal cells. [Default: 2]
-d DIRECTORY, --output-dir DIRECTORY
Output directory name.