CONVERTHEADERS.PY

NAME

ConvertHeaders.py - Converts sequence headers to the pRESTO format

DESCRIPTION

usage: ConvertHeaders.py [--version] [-h] ...

Converts sequence headers to the pRESTO format

help:

--version

show program’s version number and exit

-h, --help

show this help message and exit

subcommands:

Conversion method

generic

Converts sequence headers without a known annotation system.

454

Converts Roche 454 sequence headers.

genbank

Converts NCBI GenBank and RefSeq sequence headers.

illumina

Converts Illumina sequence headers.

	imgt		Converts sequence headers output by IMGT/GENE-DB.
	migec		Converts headers for consensus sequence generated by the MIGEC tool.
	sra		Converts NCBI SRA or EMBL-EBI ENA sequence headers.

output files:

convert-pass

reads passing header conversion.

convert-fail

raw reads failing header conversion.

output annotation fields:

<format defined>

the annotation fields added are specific to the header format of the input file.

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.