draw-tree

NAME

draw-tree - Draw NEWICK (and some other) formatted files.

SYNOPSIS

draw-tree [OPTIONS] tree file

DESCRIPTION

Draw NEWICK (and some other) formatted files.

INPUT OPTIONS:

-h, --help

Produce help message

-W arg (=8.5), --width arg (=8.5)

Page width in inches

-H arg (=11), --height arg (=11)

Page height in inches

--file arg

predicates to examine

--output arg (=pdf)

Type of output to write: tree, topology, mtree, lengths, dot, ps, pdf, svg

--out arg

Output filename (without extension)

--full

Consider only full splits by collapsing any partial splits.

--iterations arg (=2)

Number of iterations for layout algorithm

--font-size arg (=10)

Font size for taxon names

--angle_iterations arg (=0)

Number of iterations for layout algorithm with small-angle penalties

--labels arg (=horizontal)

Are the names horizontal or angled?

--collapse

Give node lengths evenly to neighboring branches and zero the node lengths.

--layout arg (=graph)

Layout method: graph, equal-angle, equal-daylight, etc.

--greedy

For equal-daylight layout: take as much daylight as possible?

--tree-layout-initial

Start an energy layout with positions from the equal-angle layout - only for multifurcating trees

--no-shade

For equal-daylight layout: reject rotations that shade other groups?

--draw-clouds arg

Draw wandering-ranges in MC trees as clouds.

--seed arg

Random seed

--verbose

Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.