ecogrep(1)

filtering ecoPCR result based on taxonomic id filter and regular expression pattern

Section 1 ecopcr bookworm source

Description

ecogrep - filtering ecoPCR result based on taxonomic id filter and regular expression pattern

ecogrep [options] filename

ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality.

This program belongs to the exoPCR package.

-1 : [FIRST] : compare the given pattern with direct strand
oligonucleotide

	-2		: [SECOND] : compare the given pattern with reverse strand oligonucleotide
	-d		: [D]atabase containing taxonomic information
	-e		: [E]rrors : max error allowed in pattern match (option-1, -2 and -p) (0 by default)
	-p		: [P]attern : oligonucleotide pattern
	-h		: [H]elp : print <this> help
	-i		: [I]gnore subtree under given taxonomic id
	-r		: [R]estrict search to subtree under given taxomic id
	-v		: in[V]ert the sense of matching, to select non-matching lines.

argument:

ecoPCR output file name