fastaq-caf_to_fastq(1)
Converts a CAF file to FASTQ format
Description
FASTAQ-CAF_TO_FASTQ
NAME
fastaq_caf_to_fastq - Converts a CAF file to FASTQ format
DESCRIPTION
usage: fastaq_caf_to_fastq [options] <infile> <outfile>
Converts CAF file to FASTQ format
positional arguments:
infile
Name of input CAF file.
outfile
Name of output FASTQ file
options:
-h, --help
show this help message and exit
-c, --clip
Use clipping info to clip reads, if present in the input CAF file (as lines of the form "Clipping QUAL start end"). Default is to not clip
-l INT, --min_length INT
Minimum length of sequence to output [1]