FASTAQ-GET_SEQ_FLANKING_GAPS

NAME

fastaq_get_seq_flanking_gaps - Gets the sequences flanking gaps

DESCRIPTION

usage: fastaq_get_seq_flanking_gaps [options] <infile> <outfile>

Gets the sequences flanking gaps

positional arguments:

infile

Name of input file

outfile

Name of output file

options:

-h, --help

show this help message and exit

--left INT

Number of bases to get to left of gap [25]

--right INT

Number of bases to get to right of gap [25]