fastaq-scaffolds_to_contigs(1)
Creates a file of contigs from a file of scaffolds
Description
FASTAQ-SCAFFOLDS_TO_CONTIGS
NAME
fastaq_scaffolds_to_contigs - Creates a file of contigs from a file of scaffolds
DESCRIPTION
usage: fastaq_scaffolds_to_contigs [options] <infile> <outfile>
Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the input
positional arguments:
infile
Name of input file
outfile
Name of output contigs file
options:
-h, --help
show this help message and exit
--number_contigs
Use this to enumerate contig names 1,2,3,... within each scaffold