fastaq-to_random_subset(1)
Make a random sample of sequences (and optionally mates as well)
Description
FASTAQ-TO_RANDOM_SUBSET
NAME
fastaq_to_random_subset - Make a random sample of sequences (and optionally mates as well)
DESCRIPTION
usage: fastaq_to_random_subset [options] <infile> <outfile> <percent>
Takes a random subset of reads from a sequence file and optionally the corresponding read from a mates file. Output is interleaved if mates file given
positional arguments:
infile
Name of input file
outfile
Name of output file
|
FLOAT |
Per cent probability of keeping any given read (pair) in [0,100] |
options:
-h, --help
show this help message and exit
--mate_file MATE_FILE
Name of mates file
--seed INT
Seed for random number generator. If not given, python’s default is used