fastq-clipper(1)
ea-utils: removes one or more adapter sequences from the fastq file
Description
FASTQ-CLIPPER
NAME
fastq-clipper - ea-utils: removes one or more adapter sequences from the fastq file
DESCRIPTION
usage: fastq-clipper [options] <fastq-file> <adapters>
Removes one or more adapter sequences from the fastq file. Adapter sequences are colon-delimited. Stats go to stderr, unless -o is specified.
OPTIONS
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-h |
This help |
-o FIL
Output file (stats to stdout)
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-p N |
Maximum difference percentage (10) |
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-m N |
Minimum clip length (1) |
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-l N |
Minimum remaining sequence length (15) |
-x [N]
Extra match length past adapter length,
N =-1 : search all N = 0 : search only up to adapter length
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-e |
End-of-line (default) |
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-b |
Beginning-of-line (not supported yet) |