fetch_all_refseq_bacterial_genomes(1)
visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
Description
FETCH_ALL_REFSEQ_BACTERIAL_GENOMES
NAME
fetch_all_refseq_bacterial_genomes - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
DESCRIPTION
USAGE:
fetch_all_refseq_bacterial_genomes -o DIR
DESCRIPTION:
Downloads all bacterial RefSeq sequences form NCBI in GenBank format. The --min and --max options can be used to restrict the size of the returned sequences.
REQUIRED ARGUMENTS:
|
-o, --output DIR |
The output directory to contain the downloaded GenBank files.
|
-m, --min INTEGER |
Records with a sequence length shorter than this value will be ignored.
|
-x, --max INTEGER |
Records with a sequence length longer than this value will be ignored.
|
-h, --help |
Show this message.
EXAMPLE:
fetch_all_refseq_bacterial_genomes -o my_project/comparison_genomes
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.