fetch_refseq_bacterial_genomes_by_name(1)
visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
Description
FETCH_REFSEQ_BACTERIAL_GENOMES_BY_NAME
NAME
fetch_refseq_bacterial_genomes_by_name - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
DESCRIPTION
USAGE:
fetch_refseq_bacterial_genomes_by_name -n STRING -o DIR
DESCRIPTION:
Downloads a GenBank record using a partial or complete bacterial species name. The --min and --max options can be used to restrict the size of the returned sequences.
REQUIRED ARGUMENTS:
|
-n, --name STRING |
Complete or partial name of the bacterial species.
|
-m, --min INTEGER |
Records with a sequence length shorter than this value will be ignored.
|
-x, --max INTEGER |
Records with a sequence length longer than this value will be ignored.
|
-o, --output DIR |
The output directory to download the GenBank file into.
|
-h, --help |
Show this message.
EXAMPLE:
fetch_refseq_bacterial_genomes_by_name -n ’Escherichia*’ -o my_project/comparison_genomes
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.