flattenGTF(1)
toolkit for processing next-gen sequencing data
Description
FLATTENGTF
NAME
flattenGTF - toolkit for processing next-gen sequencing data
DESCRIPTION
flattenGTF Version 2.0.1
Flatten features included in a GTF annotation and save the modified annotation to a SAF format file.
Usage:
./flattenGTF [options] -a <input_file> -o <output_file>
## Mandatory
arguments:
-a <file>
Name of an annotation file in GTF/GFF format.
-o <file>
Name of output file.
## Optional
arguments:
-t <string>
Specify feature type in a GTF annotation. ’exon’ by default. Features with the specified feature type are extracted from the annotation for processing.
-g <string>
Specify attribute type in GTF annotation. ’gene_id’ by default. This attribute type is used to group features into metafeatures.
|
-C |
Merging overlapping exons into multiple non-overlapping exons but all the edges are kept. |
AUTHOR
This manpage was
written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.