gff2sga.pl(1)
convert gff to sga
Description
GFF2SGA.PL
NAME
gff2sga.pl - convert gff to sga
DESCRIPTION
gff2sga.pl [options] <GFF file>
where options are:
-h|--help
Show this stuff
--db <path>
Use <path> to locate Chrom Id Storable File ’chro_idx.nstorage’
-f|--feature <feature>
Set Feature name <feature>
-s|--species <species>
Assembly <species> (i.e hg18)
|
-c |
Generate a Centered SGA file | ||
|
-u |
Generate an Unoriented SGA file | ||
|
-x |
Generate an extended SGA file with the 6th field equal to the GFF ’feature’ field, and the feature field equal to the GFF ’source’ |
AUTHOR
This manpage was
written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.