GFFUTILS-CLI_CREATE

NAME

gffutils-cli_create - Create a database

DESCRIPTION

usage: gffutils-cli create [-h] [--output OUTPUT] [--force] [--quiet]
[--merge MERGE] [--disable-infer-genes]

[--disable-infer-transcripts] filename

Create a database.

positional arguments:

filename

GFF or GTF file to use

options:

-h, --help

show this help message and exit

--output OUTPUT

Database to create. Default is to append ".db" to the end of the input filename (default: -)

--force

Overwrite an existing database (default: False)

--quiet

Suppress the reporting of timing information when creating the database (default: False)

--merge MERGE

Merge strategy to be used if if duplicate IDs are found. (default: ’merge’)

--disable-infer-genes

Disable inferring of gene extents for GTF files. Use this if your GTF file already has "gene" featuretypes (default: False)

--disable-infer-transcripts

Disable inferring of transcript extents for GTF files. Use this if your GTF file already has "transcript" featuretypes (default: False)