gffutils-cli-parents(1)
Fetch parents from the database according to ID
Description
GFFUTILS-CLI_PARENTS
NAME
gffutils-cli_parents - Fetch parents from the database according to ID
DESCRIPTION
usage:
gffutils-cli parents [-h] [--limit LIMIT] [--exclude
EXCLUDE]
[--exclude-self]
db [ids]
Fetch parents from the database according to ID.
positional arguments:
|
db |
Database to use. If a GFF or GTF file is provided instead for this argument, a database will be created for you. This can take some time (several minutes), so it’s best to create one ahead of time. | ||
|
ids |
Comma-separated list of IDs. These IDs, along with their parents, will be returned (subject to --limit and --exclude). If none provided, use all exons in the database (default: -) |
options:
-h, --help
show this help message and exit
--limit LIMIT
Feature type (string), or level (integer). No parents below this level will be returned (default: -)
--exclude EXCLUDE
Comma-separated list of featuretypes to filter out (like grep -v) (default: -)
--exclude-self
Use this to suppress reporting the IDs you’ve provided. (default: False)