glistmaker(1)
generate a list of all unique k-mers in input file with their frequencies
Description
GLISTMAKER
NAME
glistmaker - generate a list of all unique k-mers in input file with their frequencies
SYNOPSIS
glistmaker <INPUTFILES> [OPTIONS]
OPTIONS
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-v, --version - print version information and exit | |
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-h, --help - print this usage screen and exit | |
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-w, --wordlength NUMBER - specify index wordsize (1-32) (default 16) | |
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-c, --cutoff NUMBER - specify frequency cut-off (default 1) | |
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-o, --outputname STRING - specify output name (default "out") | |
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--num_threads - number of threads the program is run on (default MIN(8, num_input_files)) | |
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--max_tables - maximum number of temporary tables (default MAX(num_threads, 2)) | |
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--table_size - maximum size of the temporary table (default 500000000) | |
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-D - increase debug level |
EXAMPLES
You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md
SEE ALSO
glistquery(1), glistcompare(1), gmer_caller(1), gmer_counter(1)