GRAPHLAN_ANNOTATE

NAME

graphlan_annotate - GraPhlAn annotate module

SYNOPSIS

graphlan_annotate [-h] [--annot annotation_file] [-v] input_tree [output_tree]

DESCRIPTION

GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

graphlan_annotate is the annotate module of graphlan(1).

OPTIONS

positional arguments:

input_tree

the input tree in Newick, Nexus, PhyloXML or plain text format

output_tree

the output tree in PhyloXML format containing the newly added annotations. If not specified, the input tree file will be overwritten

optional arguments:

-h, --help

show this help message and exit

--annot annotation_file

specify the annotation file

-v, --version

Prints the current GraPhlAn version and exit

SEE ALSO

graphlan(1)

AUTHOR

The software was written by Nicola Segata <nsegata@hsph.harvard.edu>

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.