GTHSPLIT

NAME

gthsplit - split GenomeThreader output files

SYNOPSIS

gthsplit -alignmentscore | -coverage [option ...] [file ...]

DESCRIPTION

Split GenomeThreader output files containing intermediate results.

OPTIONS

-alignmentscore

split according to the overall alignment score (scr) default: no

-coverage

split according to coverage (cov) default: no

-range

set the percentage range used to create the sets default: 5

-minalignmentscore

set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00

-maxalignmentscore

set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00

-mincoverage

set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00

-maxcoverage

set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99

-v

be verbose default: no

-gzip

write gzip compressed output file(s) default: no

-bzip2

write bzip2 compressed output file(s) default: no

-force

force writing to split files default: no

-help

display help and exit

-version

display version information and exit