ktImportText(1)
explore hierarchical metagenomic data with zoomable pie charts
Description
KTIMPORTTEXT
NAME
ktImportText - explore hierarchical metagenomic data with zoomable pie charts
DESCRIPTION
Creates a Krona chart from text files listing quantities and lineages.
ktImportText \
[options] \ text_1[,name_1] \ [text_2[,name_2]] \ ...
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text |
Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with "#" will be ignored. By default, separate datasets will be created for each input (see [-c]). | ||
|
name |
A name to show in the list of datasets in the Krona chart (if multiple input files are present and [-c] is not specified). By default, the basename of the file will be used. |
[-o <string>]
Output file name. [Default: ’text.krona.html’]
[-n <string>]
Name of the highest level. [Default: ’all’]
|
[-q] |
Files do not have a field for quantity. | ||
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[-c] |
Combine data from each file, rather than creating separate datasets within the chart. |
[-u <string>]
URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.