LEFSE_PLOT_RES.PY

NAME

lefse_plot_res.py - determine features of organisms, clades, taxonomic units, genes

DESCRIPTION

usage: lefse_plot_res.py [-h] [--feature_font_size FEATURE_FONT_SIZE]
[--format {png,svg,pdf}] [--dpi DPI] [--title TITLE]

[--title_font_size TITLE_FONT_SIZE] [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] [--width WIDTH] [--height HEIGHT] [--left_space LS] [--right_space RS] [--orientation {h,v}] [--autoscale {0,1}] [--background_color {k,w}] [--subclades N_SCL] [--max_feature_len MAX_FEATURE_LEN] [--all_feats ALL_FEATS] [--otu_only] [--report_features] INPUT_FILE OUTPUT_FILE

Plot results

positional arguments:

INPUT_FILE

tab delimited input file

OUTPUT_FILE

the file for the output image

optional arguments:

-h, --help

show this help message and exit

--feature_font_size FEATURE_FONT_SIZE

the file for the output image

--format {png,svg,pdf}

the format for the output file

	--dpi DPI
	--title TITLE
	--title_font_size TITLE_FONT_SIZE
	--class_legend_font_size CLASS_LEGEND_FONT_SIZE
	--width WIDTH

--height HEIGHT

only for vertical histograms

	--left_space LS
	--right_space RS
	--orientation {h,v}
	--autoscale {0,1}

--background_color {k,w}

set the color of the background

--subclades N_SCL

number of label levels to be dislayed (starting from the leaves, -1 means all the levels, 1 is default )

--max_feature_len MAX_FEATURE_LEN

Maximum length of feature strings (def 60)

--all_feats ALL_FEATS

--otu_only

Plot only species resolved OTUs (as opposed to all levels)

--report_features

Report important features to STDOUT

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.