MAPMERS

NAME

mapMers - report statistics of mapping kmers to sequences

SYNOPSIS

mapMers {-stats|-regions|-details} -m mersize -mers mers -seq fasta

OPTIONS

-stats

reports the mean, minimum, and maximum for each sequence, along with a log2 histogram of the counts

-regions

reports regions with kmer coverage

-details

reports the forward and reverse count in the database for each kmer in the sequence

-m mersize
-mers mers

the meryl(1) database

-seq fasta

input sequence file

SEE ALSO

meryl(1), mapMers-depth(1)