MAPPING_TO_PHANDANGO

NAME

mapping_to_phandango - create a plot file for visualisation in phandango

SYNOPSIS

mapping_to_phandango -s <sam_file> -k <seer_kmers> > phandango.plot

DESCRIPTION

Creates a plot file for visualisation in phandango

OPTIONS

Required

-s, --sam

Sam file of kmers mapped to reference (unsorted)

-k, --kmers

Kmers that were mapped

Optional

-m, --map

Minimum mapping quality

-h, --help

Displays this message

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.