MELTEHH

NAME

meltEHH

SYNOPSIS

meltEHH –target 0,1,2,3,4,5,6,7 –pos 10 –file my.phased.vcf  –region chr1:1-1000 > STDOUT 2> STDERR

DESCRIPTION

OPTIONS

**meltEHH** provides the data to plot extended haplotype homozygosity
(EHH) curves and produces the data to generate the following plot:
<img src="https://github.com/vcflib/vcflib/blob/master/examples/example-ehh.png?raw=true" alt="" width=400>

**meltEHH** provides the data to plot EHH curves.
Output : 4 columns :
1. seqid
2. position
3. EHH
4. ref or alt [0 == ref]
Params:
required: t,target <STRING> A zero base comma separated list of target
individuals corresponding to VCF columns
required: r,region <STRING> A tabix compliant genomic range
format: "seqid:start-end" or "seqid"
required: f,file <STRING> Proper formatted and phased VCF.
required: y,type <STRING> Genotype likelihood format: GT,PL,GL,GP
required: p,position <INT> Variant position to melt.
optional: a,af <DOUBLE> Alternative alleles with frequencies less
than [0.05] are skipped.

Type: statistics

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.