mia-2dfluid(1)
2dfluid
Description
mia-2dfluid
NAME
mia-2dfluid - Fluid dynamic 2D registration
SYNOPSIS
mia-2dfluid -i <in-image> -r <ref-image> [options]
DESCRIPTION
mia-2dfluid This program is used for non-rigid registration based on fluid dynamics. For reference see
It uses SSD as the sole registration criterion.
OPTIONS
File-IO
-i --in-image=(input, required); io
input (test) image to be
registered
For supported file types see PLUGINS:2dimage/io
-r --ref-image=(input, required); io
reference image
For supported file types see PLUGINS:2dimage/io
-o --out-transformation=(output); io
output transformation
comprising the registration
For supported file types see PLUGINS:2dvf/io
-d --out-image=(output); io
output image deformed according
to the transformation
For supported file types see PLUGINS:2dimage/io
Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
trace -
Function call trace
debug - Debug output
info - Low level messages
message - Normal messages
warning - Warnings
fail - Report test failures
error - Report errors
fatal - Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit
Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Registration parameters
-m --mgstart=16
multigrid start size
-e --epsilon=0.001
optimization breaking condition
--mu=1
elasticity parameter
--lambda=1
elasticity parameter
--elastic
use elastic registration
PLUGINS: 2dimage/io
|
bmp |
BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values. |
Recognized file extensions: .BMP, .bmp
Supported element types:
binary data, unsigned 8 bit
|
datapool |
Virtual IO to and from the internal data pool |
Recognized file extensions: .@
|
dicom |
2D image io for DICOM |
Recognized file extensions: .DCM, .dcm
Supported element types:
signed 16 bit, unsigned 16 bit
|
exr |
a 2dimage io plugin for OpenEXR images |
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
|
jpg |
a 2dimage io plugin for jpeg gray scale images |
Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg
Supported element types:
unsigned 8 bit
|
png |
a 2dimage io plugin for png images |
Recognized file extensions: .PNG, .png
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit
|
raw |
RAW 2D-image output support |
Recognized file extensions: .RAW, .raw
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
|
tif |
TIFF 2D-image input/output support |
Recognized file extensions: .TIF, .TIFF, .tif, .tiff
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit
|
vista |
a 2dimage io plugin for vista images |
Recognized file extensions: .-, .V, .VISTA, .v, .vista
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
PLUGINS: 2dvf/io
|
datapool |
Virtual IO to and from the internal data pool |
Recognized file extensions: .@
|
exr |
a 2dvf io plugin for OpenEXR vfs |
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
|
vista |
a 2d vector field io plugin for vista |
Recognized file extensions: .V, .VF, .v, .vf
Supported element types:
floating point 32 bit
EXAMPLE
Register image test.v to image ref.v and write the deformation vector field regfield.v. Start registration at the smallest size above 16 pixel.
|
mia-2dfluid -i test.v -r ref.v -o regfield.v -s 16 |
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option ’--copyright’.