mia-2dmyoseries-dice

NAME

mia-2dmyoseries-dice - Evaluate the dice index between segmentations.

SYNOPSIS

mia-2dmyoseries-dice -i <input> [options]

DESCRIPTION

mia-2dmyoseries-dice This program is used to evaluate the per-frame dice index of segmented regions of an image with respect to the segmentation of a reference frame from the same series.

OPTIONS

-i --input=(required, input); string

original segmentation set

-k --skip=2

images to skip atthe bgin of the series

-r --reference=20

reference image

Help & Info

-V --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace - Function call trace
debug - Debug output
info - Low level messages
message - Normal messages
warning - Warnings
fail - Report test failures
error - Report errors
fatal - Report only fatal errors

--copyright

print copyright information

-h --help

print this help

-? --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

EXAMPLE

Evaluate the dice index of segmentation set segment.set with reference 30 and skipping the first two frames.

mia-2dmyoseries-dice -i segment.set -r 30 -k 2

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option ’--copyright’.