mia-2dtrackpixelmovement

NAME

mia-2dtrackpixelmovement - Track positions in 2D

SYNOPSIS

mia-2dtrackpixelmovement -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

mia-2dtrackpixelmovement Track the position of a pixel by means of a transformation obtained by using image registration. The pixel data is given in CSV format
id;time;x;y;z;reserved

The fields ’time’, ’x’, ’y’, and ’z’ are updated, and the fields ’id’ and ’reserved’ are preserved, empty lines are ignored.

OPTIONS

File-IO

-i --in-file=(input, required); string

input point set

-o --out-file=(required, output); string

output point set

-t --transformation=(input, required); io

transformation describing the monitored change
For supported file types see PLUGINS:2dtransform/io

Parameters

-T --time-step=1

time step to use for the position update

Help & Info

-V --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace - Function call trace
debug - Debug output
info - Low level messages
message - Normal messages
warning - Warnings
fail - Report test failures
error - Report errors
fatal - Report only fatal errors

--copyright

print copyright information

-h --help

print this help

-? --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 2dtransform/io

bbs

Binary (non-portable) serialized IO of 2D transformations

Recognized file extensions: .bbs

datapool

Virtual IO to and from the internal data pool

Recognized file extensions: .@

vista

Vista storage of 2D transformations

Recognized file extensions: .v2dt

xml

XML serialized IO of 2D transformations

Recognized file extensions: .x2dt

EXAMPLE

This program evaluated the changed position of pixels given in input.csv, by using a time step of 2.0 time units and the transformation change.v2df, and writes the updated positions to updated.csv.

mia-2dtrackpixelmovement -i input.csv -o output.cvs --time-step 2.0 --transformation change.v2df

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option ’--copyright’.