mia-3disosurface-from-stack

NAME

mia-3disosurface-from-stack - Extract an ist-surface froma a 3D image.

SYNOPSIS

mia-3disosurface-from-stack -i <in-image> -o <out-mesh> [options]

DESCRIPTION

mia-3disosurface-from-stack This program is used to extract an iso-surface from the input gray scale image given as slices.

OPTIONS

File-IO

-i --in-image=(required, input); string

input image filename pattern

-o --out-mesh=(required, output); string

output mesh

Help & Info

-V --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace - Function call trace
debug - Debug output
info - Low level messages
message - Normal messages
warning - Warnings
fail - Report test failures
error - Report errors
fatal - Report only fatal errors

--copyright

print copyright information

-h --help

print this help

-? --usage

print a short help

--version

print the version number and exit

Image options

-s --iso-value=128

iso-value of iso surface to be extracted

Mesh options

-f --max-faces=-1

maximum number of Faces,

-e --max-edges=-1

maximum number of Edges

-c --max-cost=0.1

maximum cost for edge collaps

-r --ratio=4

ratio of faces(edges) to target number, at which the optimization changes from edge-length to volume-optimized

-w --reverse-winding

reverse the winding of the triangles in order to make normals point away from the high intensity area

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

EXAMPLE

Extract the surface from an image set with numbers imageXXXX.png that corresponds to the value 30 and stop optimizing when the mesh consists of less than 100000 triangles.

mia-3disosurface-from-stack -i image0000.png -o mesh.vmesh -s 30 -f 100000

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option ’--copyright’.