mia-3dlandmarks-transform

NAME

mia-3dlandmarks-transform - Transform 3D landmark positions.

SYNOPSIS

mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

mia-3dlandmarks-transform Transform the locations of the landmarks by means of a given 3D transformation. Note, landmark transformations do the inverse of an image transformation (in a manner of speaking), i.e. given a transformation V(x) in an image transformation the pixel intensity at x is set to the original intensity at V(x), while a landmark at x is moved to V(x).

OPTIONS

-i --in-file=(input, required); io

input landmark set
For supported file types see PLUGINS:3dlandmarklist/io

-o --out-file=(output, required); io

output landmark set
For supported file types see PLUGINS:3dlandmarklist/io

-t --transformation=(input, required); io

transformation file
For supported file types see PLUGINS:3dtransform/io

Help & Info

-V --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace - Function call trace
debug - Debug output
info - Low level messages
message - Normal messages
warning - Warnings
fail - Report test failures
error - Report errors
fatal - Report only fatal errors

--copyright

print copyright information

-h --help

print this help

-? --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 3dlandmarklist/io

datapool

Virtual IO to and from the internal data pool

Recognized file extensions: .@

lmx

IO plugin to load and store 3D landmark lists

Recognized file extensions: .lmx

PLUGINS: 3dtransform/io

bbs

Binary (non-portable) serialized IO of 3D transformations

Recognized file extensions: .bbs

datapool

Virtual IO to and from the internal data pool

Recognized file extensions: .@

vista

Vista storage of 3D transformations

Recognized file extensions: .v, .v3dt

xml

XML serialized IO of 3D transformations

Recognized file extensions: .x3dt

EXAMPLE

Transform the landmarks given in input.lmx by applyning the transfromation stored in trans.v and store the result in output.lmx

mia-3dlandmarks-transform -i input.lmx -t trans.v -o output.lmx

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option ’--copyright’.