mia-3dvf2transform

NAME

mia-3dvf2transform - Convert a 3D vectorfield from a 3D transformation.

SYNOPSIS

mia-3dvf2transform -i <in-file> -o <out-file> [options]

DESCRIPTION

mia-3dvf2transform Creates a 3D transformation from a vector field. The input vector field is simply encapsulated into the transformation file format. The boundary conditions and the image interpolator kernel can be set at the command line.

OPTIONS

-i --in-file=(required, input); io

input transformation
For supported file types see PLUGINS:3dvf/io

-o --out-file=(output, required); io

output vector field
For supported file types see PLUGINS:3dtransform/io

-k --imgkernel=bspline:d=3

image interpolator kernel which is used when the transformation is applied to an image
For supported plugins see PLUGINS:1d/splinekernel

-b --imgboundary=mirror

Boundary condition applied when the transformation is used to transform an image
For supported plugins see PLUGINS:1d/splinebc

Help & Info

-V --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace - Function call trace
debug - Debug output
info - Low level messages
message - Normal messages
warning - Warnings
fail - Report test failures
error - Report errors
fatal - Report only fatal errors

--copyright

print copyright information

-h --help

print this help

-? --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 1d/splinebc

mirror

Spline interpolation boundary conditions that mirror on the boundary

(no parameters)

repeat

Spline interpolation boundary conditions that repeats the value at the boundary

(no parameters)

zero

Spline interpolation boundary conditions that assumes zero for values outside

(no parameters)

PLUGINS: 1d/splinekernel

bspline

B-spline kernel creation , supported parameters are:

d = 3; int in [0, 5]

Spline degree.

omoms

OMoms-spline kernel creation, supported parameters are:

d = 3; int in [3, 3]

Spline degree.

PLUGINS: 3dtransform/io

bbs

Binary (non-portable) serialized IO of 3D transformations

Recognized file extensions: .bbs

datapool

Virtual IO to and from the internal data pool

Recognized file extensions: .@

vista

Vista storage of 3D transformations

Recognized file extensions: .v, .v3dt

xml

XML serialized IO of 3D transformations

Recognized file extensions: .x3dt

PLUGINS: 3dvf/io

cvista

obsolete 3d vector field io plugin for range compressend vista (saving not supported)

Recognized file extensions: .CVF, .cvf

Supported element types:

floating point 32 bit

datapool

Virtual IO to and from the internal data pool

Recognized file extensions: .@

vista

a 3d vector field io plugin for vista

Recognized file extensions: .V, .VF, .v, .vf

Supported element types:

floating point 32 bit

vtk

3D Vector field in- and output (experimental). No attributes are stored or read.

Recognized file extensions: .VTK, .VTKVF, .vtk, .vtkvf

Supported element types:

floating point 32 bit

EXAMPLE

Transform the input vector field field.vtk to the transformation trans.v3df and specify zero boundary conditions and b-splines of degree 2 for image interpolation.

mia-3dvf2transform -i field.vtk -o trans.v3df --imgkernel bspline:d=2 --imgboundary zero

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option ’--copyright’.