NORMALIZE-IHS

NAME

normalize-iHS

SYNOPSIS

normalizeHS -s 0.01 -f input.txt

DESCRIPTION

normalizes iHS or XP-EHH scores.

OPTIONS

A cross-population extended haplotype homozygosity (XP-EHH) score is
directional: a positive score suggests selection is likely to have
happened in population A, whereas a negative score suggests the same
about population B. See for example
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721/

Output : **normalize-iHS** adds one additional column to input (normalized score).
required: -f -- Output from iHS or XPEHH
optional: -s -- Max AF diff for window [0.01]

Type: genotype

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.