nps2gps(1)

convert nucleotide-protein sets to ASN.1 genomic product sets

Section 1 ncbi-tools-bin bookworm source

Description

NPS2GPS

NAME

nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

SYNOPSIS

nps2gps [-] [-B] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-S] [-T] [-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]

DESCRIPTION

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS

A summary of options is included below.

	-		Print usage message
	-B		NG and NR rRNA
	-D		RefSeq mRNA Titles
	-F		Map by Feature ID

-G str

General ID database name

	-L		Lock components in advance
	-N		Promote Non-coding RNAs
	-P		mRNA ID from Protein
	-Q		Special mRNA titles
	-R		Enable Remote fetching from ID
	-S		Special ncRNA on preRNA
	-T		Map by Transcript ID
	-U		Remove Unnecessary gene cross-references

-f str

Substring filter

-i filename

Single input file (default = stdin)

-o filename

Single output file (default = stdout)

-p path

Path to files for batch conversion

-r path

Path for results of batch conversion

-x str

File selection suffix for batch conversion (default = .ent)

AUTHOR

The National Center for Biotechnology Information.