NTHASH

NAME

nthash - Recursive hash function for hashing all possible k-mers in a DNA/RNA sequence

SYNOPSIS

ntHash -k VAR -o VAR [-f VAR] [-h] [-s VAR] [--long] [--binary] [--verbose] files

DESCRIPTION

Unknown argument: --help

Positional arguments:

files

Input sequence files [nargs: 0 or more] [required]

Optional arguments:

	-v, --version prints version information and exits
	-k

k-mer size [required]

	-o		Output file (for -f collect) or directory path [required]
	-f		Output file organization (store hashes for each ’file’, ’record’, or ’collect’ all hashes into a single file [default: "file"]
	-h		Number of hashes per k-mer/seed [default: 1]
	-s		Input spaced seed patterns separated by commas (e.g. 1110111,11011011). Performs k-mer hashing if no value provided.

--long

Optimize file reader for long sequences (>5kbp)

--binary

Output hashes in binary files (otherwise plain text)

--verbose

Print progress to stdout

AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.