OPTIMIR

NAME

optimir - Integrating genetic variations in miRNA alignment

SYNOPSIS

optimir [options]

DESCRIPTION

OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression. OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, and study the impact of genetic variations on polymiRs’ expression.

OPTIONS

Basic options

-h, --help

Produce help message

Subcommands

process

Process a single fastq file with the OptimiR workflow

summarize

Summarize results of previously processed samples

libprep

Only prepare small RNA alignment library sequences that integrates genetic variants (required before processing multiple samples in parallel)

SEE ALSO

https://github.com/FlorianThibord/OptimiR

AUTHOR

OptimiR was written by Florian Thibord.