PERMUTEGPAT++

NAME

permuteGPAT++

SYNOPSIS

permuteGPAT++ -f gpat.txt -n 5 -s 1

DESCRIPTION

permuteGPAT++ is a method for adding empirical p-values to a GPAT++ score.

OPTIONS

Currently **permuteGPAT++** only supports wcFst, but will be extended.

OUTPUT: **permuteGPAT++** will append three additional columns:
1. The number of successes
2. The number of trials
3. The empirical p-value

file: f -- argument: the input file
number: n -- argument: the number of permutations to run for each value [1000]
success: s -- argument: stop permutations after 's' successes [1]

Type: phenotype

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.