PERMUTESMOOTH

NAME

permuteSmooth

SYNOPSIS

permuteSmooth -s wcFst.smooth.txt -f wcFst.txt -n 5 -s 1

DESCRIPTION

permuteSmooth is a method for adding empirical p-values smoothed wcFst scores.

OPTIONS

Required:
file: f -- argument: original wcFst data
smoothed: s -- argument: smoothed wcFst data
format: y -- argument: [swcFst, segwcFst]
Optional:
number: n -- argument: the number of permutations to run for each value [1000]
success: u -- argument: stop permutations after 's' successes [1]
success: x -- argument: number of threads [1]

OUTPUT: **permuteSmooth** will append three additional columns:
1. The number of successes
2. The number of trials
3. The empirical p-value

Type: statistics

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.