PHAST

NAME

phast - phylogenetic analysis with space/time models

DESCRIPTION

The PHAST package contains the following programs:
all_dists

hmm_view phastBias

base_evolve

indelFit phastCons

chooseLines

indelHistory phastMotif

clean_genes

maf_parse phastOdds

consEntropy

makeHKY phyloBoot

convert_coords

modFreqs phyloFit

display_rate_matrix

msa_diff phyloP

dless

msa_split prequel

dlessP

msa_view refeature

draw_tree

pbsDecode stringiphy

eval_predictions

pbsEncode test

exoniphy

pbsScoreMatrix tree_doctor

hmm_train

pbsTrain treeGen

hmm_tweak

phast

For help, type the program’s name followed by -h in your command line window.