PLOTHAPS

NAME

plotHaps

SYNOPSIS

DESCRIPTION

plotHaps provides the formatted output that can be used with ‘bin/plotHaplotypes.R’.

OPTIONS

Output : haplotype matrix and positions

**plotHaps** --target 0,1,2,3,4,5,6,7 --file my.phased.vcf.gz

required: t,target -- argument: a zero base comma separated list of target individuals corrisponding to VCF column s
required: r,region -- argument: a tabix compliant genomic range : "seqid:start-end" or "seqid"
required: f,file -- argument: proper formatted phased VCF file
required: y,type -- argument: genotype likelihood format: PL,GP,GP

Type: statistics

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.