PRODY

NAME

ProDy - Python Package for Protein Dynamics Analysis

DESCRIPTION

usage: prody [-h] [-c] [-v]

{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy} ...

ProDy: A Python Package for Protein Dynamics Analysis

options:

-h, --help

show this help message and exit

-c, --cite

print citation info and exit

-v, --version

print ProDy version and exit

subcommands:

{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy}

	anm		perform anisotropic network model calculations
	gnm		perform Gaussian network model calculations
	pca		perform principal component analysis calculations
	eda		perform essential dynamics analysis calculations
	align		align models or structures
	blast		blast search Protein Data Bank

biomol

build biomolecules

catdcd

concatenate dcd files

contacts

identify contacts between a target and ligand(s)

fetch

fetch a PDB file

select

select atoms and write a PDB file

energy

fix missing atoms, solvate and write a file containing energy

See ’prody <command> -h’ for more information on a specific command.