PROKKA-BIOCYC_TO_FASTA_DB

NAME

prokka-biocyc_to_fasta_db - rapid annotation of prokaryotic genomes

SYNOPSIS

prokka-biocyc_to_fasta_db [options] [--datadir biocyc_data_subdir] > proteins.faa

DESCRIPTION

--help

This help.

--verbose!

Verbose progress (default ’0’).

--datadir=s

Path to data/ folder in BioCyc organism directory (default ’’).

--sep=s

Separator between EC/gene/product (default ’˜˜˜’).

--blank=s

Replace empty EC/gene/product with this (default ’’).

--pseudo!

Include /pseudo genes (default ’0’).

--hypo!

Include ’hypothetical protein’ genes (default ’0’).

--minlen=i

Minimum peptide length (default ’0’).