qcat-eval-truth(1)

Command line interface to barcode detection library

Section 1 qcat bookworm source

Description

QCAT-EVAL-TRUTH

NAME

qcat-eval-truth - Command line interface to barcode detection library

DESCRIPTION

WARNING:root:Could not load pysam. To use qcat-eval-full please install mappy. usage: qcat-eval-truth [-h] -t TSV -n NAME -g GENOMES [--max MAX] [FASTQ]

Command line interface to barcode detection library

positional arguments:

FASTQ

options:

-h, --help

show this help message and exit

	-t TSV, --tsv TSV
	-n NAME, --name NAME
	-g GENOMES, --genomes GENOMES
	--max MAX