R_MDS

NAME

R_mds - project distance matrix into lower number of dimensions

SYNOPSIS

R_mds -k <filtered_kmers.txt> -p <pheno_file>

DESCRIPTION

Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details

OPTIONS

Required

-d, --dist

Distance matrix output by kmds

-p, --pheno

Phenotype file used by seer

Optional

-o, --output

Output prefix (default ’all_structure’)

	--pc		Number of dimensions to project into (default 3)
	-R		R executable (default ’which R’)

-h, --help

Displays this message

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.