RAPTOR

NAME

Raptor - A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

OPTIONS

Basic options:

-h, --help

Prints the help page.

-hh, --advanced-help

Prints the help page including advanced options.

--version

Prints the version information.

--copyright

Prints the copyright/license information.

--export-help (std::string)

Export the help page information. Value must be one of [html, man].

--bins (std::filesystem::path)

File containing one file per line per bin. The input file must exist and read permissions must be granted.

--input (std::filesystem::path)

The index to upgrade. Parts: Without suffix _0

--output (std::filesystem::path)

Path to new index.

--window (unsigned 32 bit integer)

The original window size. Value must be a positive integer.

--kmer (unsigned 8 bit integer)

The original kmer size. Value must be in range [1,32].

--parts (unsigned 8 bit integer)

Original index consisted of this many parts. Default: 1. Value must be a power of two.

--compressed

Original index was compressed.

VERSION

Last update: 2021-08-20--no-git
Raptor version: 2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)
Sharg version: 1.0.0
SeqAn version: 3.2.0

URL

https://github.com/seqan/raptor

LEGAL

Raptor Copyright: BSD 3-Clause License
Author: Enrico Seiler
Contact: enrico.seiler@fu-berlin.de
SeqAn Copyright: 2006-2022 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
In your academic works please cite: Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences; Enrico Seiler, Svenja Mehringer, Mitra Darvish, Etienne Turc, and Knut Reinert; iScience 2021 24 (7): 102782. doi: https://doi.org/10.1016/j.isci.2021.102782
For full copyright and/or warranty information see --copyright.