removeDup(1)
toolkit for processing next-gen sequencing data
Description
REMOVEDUP
NAME
removeDup - toolkit for processing next-gen sequencing data
DESCRIPTION
removeDup Version 2.0.1
Remove duplicated reads.
Usage:
./removeDup [options] -i <input_file> -o <output_file>
Required arguments:
|
-i <string> Name of input file in SAM/BAM format. | |
|
-o <string> Name of output SAM file including filtered reads. The format is |
BAM unless ’-S’ is specified.
Optional arguments:
|
-S |
||||
|
Generate the SAM format output. |
-r <int>
Specify the duplication cutoff. All the reads mapped to a location are removed from the output if the number of reads mapped to this location is equal or higher than the cutoff. 10 by default.
|
-t <string> A directory storing temporary files generated by the program. |
AUTHOR
This manpage was
written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.