RSEM-GFF3-TO-GTF

NAME

rsem-gff3-to-gtf - Convert GFF3 files to GTF files.

DESCRIPTION

usage: rsem-gff3-to-gtf [-h] [--make-genes-as-transcripts]
[--RNA-patterns <patterns>]

[--extract-sequences <output.fa>] input_GFF3_file output_GTF_file

Convert GFF3 files to GTF files.

positional arguments:

input_GFF3_file

Input GFF3 file.

output_GTF_file

Output GTF file.

options:

-h, --help

show this help message and exit

--make-genes-as-transcripts

GFF3 file does not contain transcripts, make each gene as a transcript. (default: False)

--RNA-patterns <patterns>

Types of RNAs to be extracted, e.g. mRNA,rRNA (default: None)

--extract-sequences <output.fa>

If GFF3 file contains reference sequences, extract them to the specified file (default: None)