salmon(1)

highly-accurate, transcript-level quantification estimates from RNA-seq data

Section 1 salmon bookworm source

Description

salmon - highly-accurate, transcript-level quantification estimates from RNA-seq data

salmon -h|--help or

salmon v1.10.1

salmon -v|--version or salmon -c|--cite or salmon [--no-version-check] <COMMAND> [-h | options]

	index		: create a salmon index
	quant		: quantify a sample

alevin

: single cell analysis

swim

: perform super-secret operation

quantmerge : merge multiple quantifications into a single file