SEGMENTFST

NAME

segmentFst

SYNOPSIS

segmentFst -s 0.7 -f wcFst.output.txt

DESCRIPTION

segmentFst creates genomic segments (bed file) for regions with high wcFst

OPTIONS

**segmentFst** provides a way to find continious regions with high Fst values. It takes the output of wcFst and produces a BED file. These high Fst region can be permutated with 'permuteGPATwindow'
Output : 8 columns :
1. Seqid
2. Start (zero based)
3. End (zero based)
4. Average Fst
5. Average high Fst (Fst > -s)
6. N Fst values in segment
7. N high fst values in segment
8. Segment length
required: -f -- Output from wcFst
optional: -s -- High Fst cutoff [0.8]

Type: statistics

EXIT VALUES

	0		Success
	not 0		Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.